[PyMOL] Defining secondary structure

Hi all, I have a script that I wrote to define the secondary structure of my protein. For some strange reason when I run the script, pymol does not recognize he commands: Parsing-Error: missing required argument: selection PyMOL>alter A/361:366/, ss='L' Parsing-Error: missing required argument: s

[PyMOL] Resolution

Hi All, I just wanted to know if there is an easy way to change the resolution of the images from 72 pixels/inch to something like 150 pixels/inch either by a pymol command or a python one. Jason

[PyMOL] png output

Hi All, I just wanted to know if there was a way to include resolution and pixels per inch ie 150 or 300 rather than the default of 72 pixles/inch in the .pml scritp ie [1280x1024, 150pixels/inch] ray png image_name.png Jason

[PyMOL] Fe-S clusters

Hi All, I'm looking for a way to display a "ball and Stick" representation of an Fe-S cluser, with a cartoon for the protein back bone. I can get the spheres for the Fe-S cluster, but can't connect them. Here's the script so far. #Pymol script for Adx 1AYF load C:\Documents and Settings\jk

[PyMOL] secondary structure and many more questions

program is running great. The stereo works very well for me. I have it running on a dual AMD athlon 1.4GHz, with an Oxygen GVX1 graphics card and 1 gig of DDR ram under the Windows 2000 pro OS. Thanks, Jason Yano