Hi All,
I'm looking for a way to display a "ball and Stick" representation
of an Fe-S cluser, with a cartoon for the protein back bone. I can get the
spheres for the Fe-S cluster, but can't connect them. Here's the script so
far.
#Pymol script for Adx 1AYF
load C:\Documents and Settings\jkyano\My Documents\P450 pdb\1AYF_A.pdb,
ADX
bg white
### cut below here and paste into script ###
set_view (\
-0.057087217, 0.618627429, -0.783607304,\
0.026588190, 0.785550535, 0.618226647,\
0.998013437, 0.014458310, -0.061293427,\
-1.276597023, 0.201005965, -106.195739746,\
-12.916477203, -11.231512070, -8.815745354,\
74.405113220, 137.986404419, 0.000000000 )
### cut above here and paste into script ###
util.ss
color slate, ADX
hide everything, ADX
show cartoon, ADX
select fes =(resid 109)
show sphere, fes
color yellow, fes
alter (name s1), vdw=.75
alter (name s2), vdw=.75
rebuild
sel elem fe
color marine, fe
Thanks for the help,
Jason
