Re: [PyMOL] Pymol not opening files

2024-02-24 Thread Jared Sampson
Hi Shivani - PyMOL's defer_builds_mode setting can improve performance when loading large trajectories. You can type `set defer_builds_mode, 3` on the PyMOL command line or adjust it via the Settings > Edit All menu. Hope that helps. Cheers, J

Re: [PyMOL] [Help]About indentifying interaction between residues

2024-02-24 Thread Jared Sampson
Hi Nikita - To me this looks like the cartoon representation for missing residues, which is controlled by the cartoon_gap_cutoff setting. If you either `hide cartoon` or `set cartoon_gap_cutoff, 0`, does it go away? Usually the dashed line wou

Re: [PyMOL] Pymol not opening files

2024-02-24 Thread Petro
I would not use pymol for big trajectory analysis. On Fri, 23 Feb 2024 at 22:13, shivani godbole wrote: > Hello, > > This is Shivani Godbole. I use Pymol for the movie files generated using > MD simulations. I am trying to use Pymol to visualize one of the movie > files which is around 2 GB in