Re: [PyMOL] Dss when creating movie from dcd traj

Hi Effie, try to load the trajectory with the option discrete=1: load trajectory.dcd, discrete=1 Best, Norbert Am 09.11.2023 um 19:38 schrieb Effie Artikis: Hello, I’ve uploaded my MD simulation and am trying to create a movie but I’ve noticed that when I play the MD simulation, the second

[PyMOL] Dss when creating movie from dcd traj

Hello, I’ve uploaded my MD simulation and am trying to create a movie but I’ve noticed that when I play the MD simulation, the secondary structure isn’t updated frame by frame. For example, although it is an unfolding simulation the protein maintains the secondary structure of the initial frame th

Re: [PyMOL] How to delete/hide unwanted poses in Pymol?

Hi Luigi, that depends on how the data are read into PyMOL and how the coordinate files are structured. For example, if you read in a pdb file ligand1.pdb, which contains this ligand with different poses having different residue numbers and next you read in a second pdb file for the second l

[PyMOL] How to delete/hide unwanted poses in Pymol?

Hello, I have several poses from a docking to a protein and I have different ligands to compare. I can load on PyMol the different ligands on a same protein file, and I can look at each pose for the different ligands but only, let's say, in sync: pose 1 of ligand 1 together with pose 1 of ligand