Hi Effie,
try to load the trajectory with the option discrete=1:
load trajectory.dcd, discrete=1
Best,
Norbert
Am 09.11.2023 um 19:38 schrieb Effie Artikis:
Hello,
I’ve uploaded my MD simulation and am trying to create a movie but
I’ve noticed that when I play the MD simulation, the secondary
structure isn’t updated frame by frame. For example, although it is an
unfolding simulation the protein maintains the secondary structure of
the initial frame throughout the trajectory. Employing the dss command
for any frame applies those secondary structural characteristics to
the rest of the frames in the trajectory. Is there a way to update the
dss for each frame as the simulation plays?
Thanks!
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