You can select by cordinates, e.g.
select my_selection, z>12.5 (see
https://pymolwiki.org/index.php/Selection_Algebra)
So you can select for a range of z-coordinates:
select my_selection, z >12.5 and z< 15
best regards
Annemarie
Dr.
Thanks Jared for your reply. I apologize for not clear. I want to use the plane
to select the residues of interest in protein.
Best Regards,
Divya
From: Jared Sampson
Sent: Tuesday, April 23, 2019 9:27 PM
To: Divya Kaur Matta
Cc: pymol-users
Subject: Re: [PyMO
Hi Divya -
It's not entirely clear what you're trying to do from your description. Are
you looking to select residues near the plane, or perhaps use the plane to
divide residues into "of interest" and "not of interest"? I think PyMOL can be
useful here, but the approach will likely be differ
Hi all,
I wanted to ask how to select a plane (perpendicular to zaxis) so that I can
select all residues of interest in a protein. Any help is greatly appreciated.
Best Regards,
Divya
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Hi Elmira,
If you are using windows, Open Source PyMOL for python3.6 can be found here:
https://www.lfd.uci.edu/~gohlke/pythonlibs/#pymol
If you are using Mac, Open Source PyMOL via macports still depends on Python2.7
by default.
However, you can install PyMOL built with the macports python3.6
Hello
I am going to work with pymol through python 3.6. When I type (from pymol
import cmd) in the jupyter notebook, I get the following error:
ModuleNotFoundError: No module named 'pymol'
Could you please help me how can I fix the problem? How can I install
a version of pymol that is compatible
1. Ray tracing after morphing (Pascal Egea)
Which version of PyMOL are you using? In the free edu version, Raytracing is
suppressed.
In the incentive version, you find under the movie menu the option “ray trace
frames” which you need to check.
You may also want to first set your viewport
(htt
