[PyMOL] cartoon_highlight_color for specific regions of structure?

2015-01-31 Thread Gregg Wells
Can cartoon_highlight_color be applied to specific regions of a protein structure?  For example, I am viewing PDB file 2bg9 in the cartoon mode, with each chain in a different color.  My PyMOL version is 1.7.4.1 running on a 64-bit Windows computer. The command:  set cartoon_highlight

[PyMOL] The default tunnel calculation settings for CAVER 2.1.2

2015-01-31 Thread Sajeewa Pemasinghe
Hello everyone, Two years ago I used CAVER 2.1.2 for calculation of intra-molecular tunnels. I know that the current version of CAVER allows us to view and change the configuration file (for default tunnel calculation settings). I couldn't find such a configuration file for CAVER 2.1.2. Does anybo

Re: [PyMOL] Cannot compile svn source

2015-01-31 Thread Thomas Holder
Dear Arnaud, we do parallel builds, that's why it doesn't always stop at the same file. You didn't even include the error in your example output, only (irrelevant) warnings. To find the error, do this: export JOBS=1 python setup.py build install ... Cheers, Thomas On 30 Jan 2015, at 04:13,

[PyMOL] Cannot compile svn source

2015-01-31 Thread Arnaud Basle
Dear all, I am trying to compile pymol from source following the instructions here: http://www.pymolwiki.org/index.php/Linux_Install It used to work for me a while ago but now the compilation hangs without error. Pressing return give me back the terminal prompt. The compiling process does not