Hi Bertha,
can you rephrase your question? I'm not sure if anyone understood what you try
to achieve. Also, I'm not sure if this will be a PyMOL task at all.
Cheers,
Thomas
On 03 Apr 2014, at 14:07, Martin, Bertha wrote:
> Good afternoon,
>
> I am designing an antibody and in doing so, I
Hi Suzanne,
looks like you only deprotected the CA atoms. If you have this as a named
selection, try "A > modify > complete > molecules" and deprotect again. Or type:
PyMOL> deprotect bymol (sele)
Instead of working with one object and protecting/deprotecting of subsets of
atoms, I suggest to
Hi Tom,
PyMOL provides a low-level scripting API to load geometry as "compiled graphics
objects" (CGO). To learn how to draw a rectangular plane, have a look at
examples/devel/cgo_plane.py in the PyMOL installation (or source) directory.
Hope that helps.
Cheers,
Thomas
On 31 Mar 2014, at 03
Thanks Thomas!
As a workaround I will divide my data in smaller chunks.
Cheers,
Osvaldo.
On Fri, Apr 4, 2014 at 4:54 PM, Thomas Holder wrote:
> Hi Osvaldo,
>
> you are right, I can reproduce this. We'll look into it and let you know
> when it has been fixed.
>
> Cheers,
> Thomas
>
> On 02
Hi Matt,
plugins are not loaded automatically in headless mode. You have to import your
plugin first if you want to use it from a script. Something like:
import pmg_tk.startup.yourplugin
The plugin manager tells you the python module name of your plugin when you
click on "Info".
Cheers,
Tho
Hi Osvaldo,
you are right, I can reproduce this. We'll look into it and let you know when
it has been fixed.
Cheers,
Thomas
On 02 Apr 2014, at 20:30, Osvaldo Martin wrote:
> Hi,
>
> I need to run an script based on PyMOL for a thousands of proteins. The
> problem is that even when I delet
I am using pymol 1.3 and having trouble with doing manual superposition with my
structures. I am able to download my structures, select the portion I want to
move manually and, after deprotecting it using the action menu move it using
the shift-mouse editing command. When I do this with my selec
