[PyMOL] missing external gui

2014-04-01 Thread meginir urestal
hi, i'm running pymol 1.7.0.0 on a windows machine. When I launch pymol, the external gui is missing. Does anyone have a fix? reinstalling the program doesn't do anything. thx -- ___

Re: [PyMOL] Script from command line invoking plugins

2014-04-01 Thread Matthew Baumgartner
Hi, If you don't need the GUI you can access your command using the extend command. In your script, put something like: from pymol import cmd def foo(bar): print bar cmd.extend('foo', foo) Then in pymol first use the 'run' command to have pymol read your script, and then call the funct

[PyMOL] Script from command line invoking plugins

2014-04-01 Thread mantesat
Hi all, I'm trying to run a PyMOL script from command line that invokes some custom plugins I've written. Everything works as supposed in GUI mode, but when running the script from command line, the parser complains that can't find any of the plugin commands included in the PyMOL script. This