Hi Appu,
interpolation between two conformations is called "morphing". You can do
this with the incentive version of PyMOL, which includes an additional
component called RigiMOL.
With incentive PyMOL 1.6, you can morph directly from the object menu:
A > generate > morph
See also:
http://pymolwik
Dear Pascal,
Do you have any errors/warning when launching PyMOL?
If you fetch a structure in your PML file, be sure that the structure is
downloaded before to start the plugin (use: fetch pdb_code, async=0)
Can you send me some part of your PML file, so I can help you to debug?
Best regards,
Hi Pascal,
PyMOL treats .pml and .py files differently. The "cluster_count"
script was written as a .py file as needs to be used as such.
run cluster_count.py
cluster_count PO4
worked just fine when run as a Python file.
Cheers,
-- Jason
On Tue, Jul 9, 2013 at 6:06 AM, Pascal Auffinger
wrot
Hi,
I tried to use the "cluster_count" script
(http://www.pymolwiki.org/index.php/Cluster_Count)
in a pymol.pml file. Unfortunately I get the following message:
---
PyMOL>cluster_count PO4
Traceback (most recent call last):
File "/home/sws2/Desktop/pymol/modules/pymol/parser.py", line 464, in p
