Hello pymol users,
I am trying to generate symetry related molecules for a molecule in space
group P322 with one molecule in the ASU. unfortunately I get a lot of
clashes with the symmetry mates and wrong contacts that just are not there
when visualizing in coot.
I wonder if this is a problem of
Hi João
Thanks! it worked fine!
>>Just make sure not to have 0.0 bfactors in there!
true :) I normalized them by adding 1 to all.
Cheers
Afonso
On Thu, Jul 4, 2013 at 1:13 PM, João Rodrigues wrote:
> Hi Afonso,
>
> PyMOL allows for Python scripting so in principle you could do something
>
Hi Afonso,
PyMOL allows for Python scripting so in principle you could do something
like:
import math
alter structure, b=math.log(b, 10)
Just make sure not to have 0.0 bfactors in there!
Cheers,
João
2013/7/4 Afonso Duarte
> Dear All,
>
>
> I have a pdb file composed by several chains wher
Dear All,
I have a pdb file composed by several chains where the b-factor column was
replaced by a physical property of the proteins. I am now trying to color
according to b-factor and to obtain a better representation of the
properties described. i.e. I am interested in calculating the log of th
