Dear All,

I have a pdb file composed by several chains where the b-factor column was
replaced by a physical property of the proteins. I am now trying to color
according to b-factor and to obtain a better representation of the
properties described. i.e. I am interested in calculating the log of the
b-factor and place that value in the b-factor column.

I tried to export this column form the pdb, process it and then import it
back, but due to the presence of different chains the b-factors got messed
up.

Would it be possible to do this kind of math  operation directly in Pymol?


Best


Afonso
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