Thomas, another nice solution.
John, I suggest passing an object name, however, or your new load
command will preset every object not just the one you loaded.
Cheers,
-- Jason
On Wed, Jul 11, 2012 at 4:22 PM, John Amraph wrote:
> Thank you, Thomas.
>
> Putting code below to python script and a
Or overload the cmd.load function:
python
from pymol import cmd, preset
load_orig = cmd.load
def load_new(*args, **kwargs):
load_orig(*args, **kwargs)
preset.ligand_cartoon('all')
cmd.load = load_new
python end
Cheers,
Thomas
Jason Vertrees wrote, On 07/11/12 22:06:
> John,
>
> Put
Thank you, Thomas.
Putting code below to python script and adding run script.py to pymolrc
have helped!
*from pymol import cmd, preset
load_orig = cmd.load
def load_new(*args, **kwargs):
load_orig(*args, **kwargs)
preset.ligand_cartoon('all')
cmd.load = load_new*
On Wed, Jul 11, 2012 at
John,
Put this in your ~/.pymolrc:
import pymol
def my_load(file,obj):
cmd.load(file,obj)
preset.ligand_cartoon(obj)
cmd.extend("my_load", my_load)
Then you can load files as,
my_load /path/to/file, object_name
Cheers,
-- Jason
On Wed, Jul 11, 2012 at 12:48 PM, John Amraph wrot
Hi Hena -
If you're not seeing the effects of the "alter" statement, try issuing the
command "rebuild" afterward and see if that helps.
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Ave MSB 398
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/
On Jul 10,
Dear collegues,
I need your help in following question. I want to visualize pdb in the *
preset.ligand_cartoon("all",_self=cmd)* mode when Pymol is opening the pdb
file.
I tried several options:
- include preset.ligand_cartoon("all",_self=cmd) in *pymolrc*
- making a pymol script(from pymol
