Thank you, Thomas.
Putting code below to python script and adding run script.py to pymolrc
have helped!
*from pymol import cmd, preset
load_orig = cmd.load
def load_new(*args, **kwargs):
load_orig(*args, **kwargs)
preset.ligand_cartoon('all')
cmd.load = load_new*
On Wed, Jul 11, 2012 at 4:59 PM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Or overload the cmd.load function:
>
> python
> from pymol import cmd, preset
> load_orig = cmd.load
> def load_new(*args, **kwargs):
> load_orig(*args, **kwargs)
> preset.ligand_cartoon('all')
> cmd.load = load_new
> python end
>
> Cheers,
> Thomas
>
> Jason Vertrees wrote, On 07/11/12 22:06:
>
> John,
>>
>> Put this in your ~/.pymolrc:
>>
>> import pymol
>>
>> def my_load(file,obj):
>> cmd.load(file,obj)
>> preset.ligand_cartoon(obj)
>>
>> cmd.extend("my_load", my_load)
>>
>> Then you can load files as,
>>
>> my_load /path/to/file, object_name
>>
>>
>> Cheers,
>>
>> -- Jason
>>
>> On Wed, Jul 11, 2012 at 12:48 PM, John Amraph <john.amr...@gmail.com>
>> wrote:
>>
>>> Dear collegues,
>>>
>>> I need your help in following question. I want to visualize pdb in the
>>> preset.ligand_cartoon("all",_**self=cmd) mode when Pymol is opening the
>>> pdb
>>> file.
>>> I tried several options:
>>>
>>> include preset.ligand_cartoon("all",_**self=cmd) in pymolrc
>>> making a pymol script(from pymol import cmd\
>>> preset.ligand_cartoon("all",_**self=cmd)) and adding run script.py in
>>> pymolrc
>>>
>>> But that doesn't work.
>>>
>>> Thank you!
>>> John Amraph
>>>
>>> PS: OS - Win7, pymol v0.9
>>>
>>
> --
> Thomas Holder
> MPI for Developmental Biology
> Spemannstr. 35
> D-72076 Tübingen
>
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