Malai,
The PDB is corrupt. Please put an "ENDMDL" after your "TER" line.
Cheers,
-- Jason
On Fri, May 18, 2012 at 3:31 PM, Jason Vertrees
wrote:
> Hi Hendry,
>
> We're happy to help, but we need more information. Do you have a PDB
> which replicates this problem? Also, what version of PyMOL ar
Hi Adam,
set cartoon_trace_atoms
set cartoon_throw, 1
If you want secondary structures, then you'll need to assign them
using the 'alter' command.
Cheers,
-- Jason
On Fri, May 18, 2012 at 5:13 PM, H. Adam Steinberg wrote:
> Hi all,
>
> If you open a c-alpha pdb (3ixz for example) in PyMol, y
Hi all,
If you open a c-alpha pdb (3ixz for example) in PyMol, you can show the
c-alphas as spheres, or you can show a cartoon as a tube (ribbon like) but you
can make a traditional flat faced PyMol cartoon. Yet when you open the same pdb
in JMol it shows the traditional PyMol cartoon as the de
So, i took the solution to install CentOS 6.2 on one machine.
Together with the EPEL repository, I could install all the necessary
libraries.
And then compile on CentOS.
It now works fine for all our RHEL 6.2 computers in the group.
Thanks!
2012/5/18 Jason Vertrees
> Hi Troels,
>
> Sorry for
Hi Hendry,
We're happy to help, but we need more information. Do you have a PDB
which replicates this problem? Also, what version of PyMOL are you
using? Is this on a laptop or desktop? Finally, what video card do you
have?
Cheers,
-- Jason
On Fri, May 18, 2012 at 4:25 AM, Hendry wrote:
> Dear
Hi Marc,
That's our error. Please file this case on the open-source bug tracker
(http://sourceforge.net/tracker/?group_id=4546&atid=104546) and we'll
get to it as soon as we can.
Cheers,
-- Jason
On Fri, May 18, 2012 at 1:45 PM, Marc Piuzzi wrote:
> Hello everyone,
>
> I just compiled PyMOL on
Hello everyone,
I just compiled PyMOL on my Mac and I have an error when I try to adjust the
transparency settings :
> ERROR: CGOOptimizeToVBONotIndexed() BEFORE glGenBuffers returns err=1282
The programs runs nicely (so far), but that problem is quite disturbing ...
I have the same issue with
Yarrow,
You can also try setting "ray_trace_slope_factor" to something large like 5.
Cheers,
-- Jason
On Thursday, May 17, 2012, Yarrow Madrona wrote:
> Same thing happens. I get cross hatches with ray_trace_mode set at two and
> the gain anything above 0. Without the gain I don't get cross h
