Thanks Jason, your script works wonderfully.
On Thu, Dec 2, 2010 at 3:00 PM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Ramiro,
>
> You have a couple options. First you can select File > Save
> Molecule... from the upper control window and choose all the files, or
> you can run
Hi Emilio,
Yes, PyMOL can indeed produce anaglyph images in stereo (even
ray-traced). This has to be PyMOL's most cost-effective 3D solution.
Here's how:
# grab a protein
fetch 1oky, async=0
# setup a scene for viewing; greys work nicely
color grey70
as sticks, org
zoom resn STU
show surface, p
Hi
I know that I can create cross-eye stereo images with PyMOL but I was
curious how to create anaglyphic (Red/Blue, Red/Cyan or
Red/Blue-Green) 3D images similar to those created in Spartan. Other
than post-processing the images with Photoshop, is there a way to have
PyMOL natively construct thes
Hi Ramiro,
You have a couple options. First you can select File > Save
Molecule... from the upper control window and choose all the files, or
you can run the 30-second old saveGroup command
(http://www.pymolwiki.org/index.php/SaveGroup).
It's easy to save a group to disk as one file ('save fileN
I answer myself. New OpenBabel 2.3.0 is able to process .pdbqt files, so
what I wanted is now as simple as
$ babel -ipdbqt file.pdbqt -osdf newfile.sdf
after upgrading my OpenBabel installation.
However, it would still be interesting to have the option to save the
individual pdb for each pose fro
Thanks for reading this.
I am doing docking studies with Vina, getting a single .pbqt file with
all the ligand poses. The magnificent toGroup script:
http://www.pymolwiki.org/index.php/ToGroup
allows me to easily create a single entry for each pose inside pymol,
making the saving of an individual
