Re: [PyMOL] small molecule geometry gets whacked in creating multi-state object. rebuild?

2010-11-09 Thread Jason Vertrees
Hi Seth, I haven't seen that (in this scenario). Can you send me a few PDB examples? Cheers, -- Jason On Mon, Nov 8, 2010 at 10:13 PM, Seth Harris wrote: > Hi all, > I feel I should know this one. I have a program looping through structures > and bringing each small molecule into a single mul

Re: [PyMOL] Dont resequence atoms when saving

2010-11-09 Thread Jason Vertrees
Hi Martin, set retain_order set pdb_retain_ids Cheers, -- Jason On Tue, Nov 9, 2010 at 4:30 AM, Martin Hediger wrote: > Dear all > It occured to me that PyMOL is resequencing a structure when saving. I > am trying to interpolate between two structures where it is critical to > have identical s

[PyMOL] Dont resequence atoms when saving

2010-11-09 Thread Martin Hediger
Dear all It occured to me that PyMOL is resequencing a structure when saving. I am trying to interpolate between two structures where it is critical to have identical sequence in both structures. Is it possible submit a -option to the save command? Thanks for your help Martin -