Hi Seth, I haven't seen that (in this scenario). Can you send me a few PDB examples?
Cheers, -- Jason On Mon, Nov 8, 2010 at 10:13 PM, Seth Harris <set...@gmail.com> wrote: > Hi all, > I feel I should know this one. I have a program looping through structures > and bringing each small molecule into a single multi-state object so I can > tab through the states. > I do: > create all_lig, this_ligand, 1, 1 > then go on to the next one: > create all_lig, next_ligand, 1, 2 > and so on.... > however, the bonds get all messed up, presumably with atom names confused? I > tried issuing a "rebuild all_lig" in between adding but that didn't seem to > help. What am I missing? > Thanks, > Seth > > > ------------------------------------------------------------------------------ > The Next 800 Companies to Lead America's Growth: New Video Whitepaper > David G. Thomson, author of the best-selling book "Blueprint to a > Billion" shares his insights and actions to help propel your > business during the next growth cycle. Listen Now! > http://p.sf.net/sfu/SAP-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ The Next 800 Companies to Lead America's Growth: New Video Whitepaper David G. Thomson, author of the best-selling book "Blueprint to a Billion" shares his insights and actions to help propel your business during the next growth cycle. Listen Now! http://p.sf.net/sfu/SAP-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
