Hi Thomas,
> To address your question, it is not possible to my knowledge to upload
> a sequence only to PyMOL. Keep in mind that PyMOL is a molecular
> viewer, not a sequence viewer. If you want to see your sequence, you
> probably would have to create a 3D model of your sequence (e.g. using
> M
A multiple sequence viewer incorporating structural information would be
incredibly helpful, as then I wouldn't have to generate models for
everything I want to compare substitutions in.
It might be too much to ask of PyMOL to be good at everything, however.
Perhaps adding the ability to read i
Hi Ashok,
there are several ways to visualise alignments. Here is a nice overview:
Visualization of multiple alignments, phylogenies and gene family evolution
James B Procter, Julie Thompson, Ivica Letunic, Chris Creevey, Fabrice
Jossinet & Geoffrey J Barton
Nature Methods 7, S16 - S25 (2010)
htt
hi,
do u know how to upload a sequence which is not in PDB. we dnt know the name of
the sequence and we have only 250 residues we can align with the other
file. we did that and we can upload those sequences from PDB but now we need to
upload the original sequence.
thanks...in advance.
ash
Hi Timothy,
Can you please send me the screenshots.
Adaptation to the vagaries of vendor-specific hardware is always an
issue. I'm happy to look into the problem.
Thanks,
-- Jason
On Tue, May 25, 2010 at 6:31 PM, Tim Travers wrote:
>
> Good afternoon,
>
> Sorry for posting twice, just in cas
Hi All,
I noticed that when I write a script that prints something in PyMOL that there
appears to be a limitation to the continuous length that can be printed to the
external GUI. Here is an example script:
#
from pymol import cmd
def testing ():
out=
