Re: [PyMOL] broken

2009-09-02 Thread Warren DeLano
Joel, When using the PyMOL launch icons, it is only possible to have one active version installed (registered) under Windows. However, you can (1) copy and rename the Program Files \ DeLano Scientific \ PyMOL folder from a correctly installed version, then (2) edit the launch.bat file insi

Re: [PyMOL] Getting ranges from selections

2009-09-02 Thread Jason Vertrees
Folmer, I wrote a script like this a while ago. I was importing huge selection lists into PyMOL and it was crashing. So, I created a script to turn selection lists like, 1+2+3+4+5+6+7+101+102+103+104 into 1-7+101-104 Here's an example execution: PyMOL>fetch 1cll PyMOL>sele EE, res

[PyMOL] Getting ranges from selections

2009-09-02 Thread Folmer Fredslund
Dear all, For several reasons I have been printing the residue numbers from selections. This could be just the loops, or interface residues defined with the script from Jason Vertrees. I use iterate for this and it works well enough, however I would like to be able to make: 1. a non-redundant li

[PyMOL] PyMOL on Mac OS X 10.6 (Snow Leopard)

2009-09-02 Thread Jason Vertrees
Howdy, Just thought I'd let those Mac users know that PyMOL works nicely (even better in fact) on Snow Leopard. If you run PyMOL on X11 (not MacPyMOL) using fink, then to compile you may need to make the symbolic link /usr/bin/gcc point to /usr/bin/gcc-4.0 instead of the default /usr/b

Re: [PyMOL] Smooth fading of surface in movie?

2009-09-02 Thread Dirk Kostrewa
Dear PyMOLers, thanks a lot to all of you for your helpful suggestions! I will try Tsjerk's way that probably keeps me from writing an external Fortran program for generating pymol commands ;-) Best regards, Dirk. Am 01.09.2009 um 20:42 schrieb Tsjerk Wassenaar: Hi :) Some people are j