Actually, upon closer look, the residue wasn't defined using the proscribed
PDB alternate location identifiers, so in fact, PyMOL itself is unable to
avoid misconnecting the atoms.
Thus, you'll need to use "unbond" either way.
_
From: pymol-users-boun...@lists.sourceforge.net
[mailto:py
Mark,
set connect_mode = 0 is the default, and this uses both distance-based and
explicit (CONECT-based) connectivity.
set connect_mode = 1 uses only explicity connectivity
we don't have a connect_mode = 2 yet (forcing use of distance-based
connectivity only), so instead, you'll need to remo
AFAIK setting connect_mode=1 strictly uses the CONECT records from pdb file
to draw bonds.
Cheers,
Abhi.
On 9/6/07, Mark A Saper wrote:
>
> This was previously discussed in an archived email but I can't find it
> right now. Does the setting connect_mode=0 use the CONECT records in the
> PDB f
This was previously discussed in an archived email but I can't find
it right now. Does the setting connect_mode=0 use the CONECT records
in the PDB file or not? I think it does. Apparently in pdb code
1ABE, the CONECT records were changed in a 2005 revision. Two
alternate sugar conformat
