This was previously discussed in an archived email but I can't find
it right now. Does the setting connect_mode=0 use the CONECT records
in the PDB file or not? I think it does. Apparently in pdb code
1ABE, the CONECT records were changed in a 2005 revision. Two
alternate sugar conformations are now interconnected when using the
current 1ABE. The old 1ABE (from 1993) seems fine.
Should setting connect_mode to 0 before loading PDB fix it? I don't
think it does.
Thanks,
Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
Biophysics, University of Michigan
930 N University Ave
Ann Arbor MI 48109-1055 U.S.A.
sa...@umich.edu (734) 764-3353 fax (734) 764-3323
http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html
