RE: : [PyMOL] Surface Vertex Coordinates

2006-03-16 Thread Warren DeLano
> Of course it would be a whole lot easier if PyMol output VRML > directly > . Warren ? Chris Want's latest VRML2 code is now in CVS (with a few minor tweaks of my own...) save my_vrml.wrl Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano S

RE: [PyMOL] disulfide bonds

2006-03-16 Thread Warren DeLano
Marilyn, You've got to show the actual lines or sticks: show sticks, (cys/ca+cb+sg) and byres (cys/sg and bound_to cys/sg) Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Fr

[PyMOL] disulfide bonds

2006-03-16 Thread Yoder, Marilyn
Hi, I apologize because I suspect this question has been asked before, but I don't see it in the FAQ, Wiki, and can't figure how to efficiently search the maillist archive. How does one draw a disulfide bond? My preference is the classical 'thunderbolt', from CA-S-S-CA atoms. Thanks, Marilyn

[PyMOL] labeling using PyMOL

2006-03-16 Thread Isabel Garcia-Saez
Hello, After being able to create labels in stereo (thanks a lot, Warren, for your quick answer!) I have another problem now: I would like to know if it is possible to label using "symbol" as a font (e.g. to indicate helices with an "alpha" and beta-strands with a "beta"). Thanks to everyo

[PyMOL] Re: building peptides (gilleain torrance)

2006-03-16 Thread Alan
Thx Gilleain! Cheers, Alan > Message: 1 > Date: Wed, 15 Mar 2006 09:37:55 + > From: "gilleain torrance" > To: Pymol > Subject: [PyMOL] Re: building peptides > > Hi, > > The wiki has a page on this: > > http://www.pymolwiki.org/index.php/Peptide_Sequence > > except it doesn't mention the zwi