> Of course it would be a whole lot easier if PyMol output VRML > directly > ..... Warren ?????
Chris Want's latest VRML2 code is now in CVS (with a few minor tweaks of my own...) save my_vrml.wrl Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Laurence Pearl > Sent: Wednesday, March 15, 2006 9:35 AM > To: Benjamin Hitz > Cc: pymol-users@lists.sourceforge.net > Subject: Re: : [PyMOL] Surface Vertex Coordinates > > The Povray intermediate file generated when you do 'ray > renderer = 1' > contains all vertices, normals and colouring information for > cartoon and surface object types. However you do need to > produce a parsing script to extract these in to a useful form > for importing into other programs. Have a look at the front > cover of Mol Cell vol 20(4) - I generated a cartoon of the > protein in PyMol, output it as a povray file, and then > converted it to VRML using a jiffy produced by Chris > Richardson, and then used it as an object in the Blender 3D > modelling > package to generate the picture. > > Of course it would be a whole lot easier if PyMol output VRML > directly > ..... Warren ????? > > Laurence Pearl > > > On 15 Mar 2006, at 17:01, Benjamin Hitz wrote: > > >> > >> I am interested in the coordinates of the vertices of the mesh > >> representation of the molecular surface. Is there any > method to read > >> them out? > >> > >> Thanks > >> > > > > Me too. With coloring and/or other "property" information as well. > > > > > > > > -- > > Ben Hitz > > Senior Scientific Programmer ** Saccharomyces Genome Database ** GO > > Consortium Stanford University ** h...@genome.stanford.edu > > > > > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by xPML, a groundbreaking scripting > > language that extends applications into web and mobile > media. Attend > > the live webcast and join the prime developer group > breaking into this > > new coding territory! > > http://sel.as-us.falkag.net/sel? > > cmd=lnk&kid=110944&bid=241720&dat=121642 > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > -------------------------------------------------------------- > ---------- > -- > Laurence H. Pearl > > Section of Structural Biology, Institute of Cancer Research > Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK > > Phone +44-(0)20 7153 5422 : Secretary +44-(0)20 7153 5443 > FAX +44-(0)20 7153 5457 : E-Mail laurence.pe...@icr.ac.uk > -------------------------------------------------------------- > ---------- > -- > " Live Simply and do Serious Things .. " - Dorothy Crowfoot Hodgkin > -------------------------------------------------------------- > ---------- > -- > > > > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a groundbreaking > scripting language that extends applications into web and > mobile media. Attend the live webcast and join the prime > developer group breaking into this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&; > dat=121642 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
