[PyMOL] Name length in names panel

2005-07-27 Thread Sebastien Moretti
Hello, Is there a way to expand the names panel to be able to read object and selection names larger than 16 characters ? Or, a way to show the full names when they are selected with the mouse ? Thanks -- Sébastien Moretti http://www.igs.cnrs-mrs.fr/ CNRS - IGS 31 chemin Joseph Aiguier 13402

[PyMOL] Re: vmd-l: FC4 stereo problems

2005-07-27 Thread John Stone
Hi, I can't comment about how the NVidia stereo works with other packages but there are a few facts about the NVidia drivers that apply equally to all of us: - Unlike classic graphics workstations like SGI and Sun, with NVidia you can have _either_ stereo, or you can have multisample

RE: [PyMOL] nVidia Quadro FX 1400, FX 3400 and FX 4400 performances

2005-07-27 Thread Wang Chern Hoe
hi Cameron, Geforce 6800GT and 6800Ultra come with PCI-E interfaces nowadays. Besides, the AGP8x vs PCI-E architecture does not have any significant performance difference for most people according to tests carried out by http://anantech.com, and many others. Your reported advantage in glxgear

[PyMOL] FC4 stereo problems

2005-07-27 Thread Cameron Mura
Demetres & Roger, I've had the same problem w/ stereo on FC4 (tested only w/ an nVidia Quadro 700 XGL card), and have been meaning to mail the list. The problem occurs even after taking the typical steps to set-up the nVidia drivers on the system (as described by Roger), and also occurs w/ h

Re: [PyMOL] nVidia Quadro FX 1400, FX 3400 and FX 4400 performances

2005-07-27 Thread Cameron Mura
part of this is also the hardware issue of AGP (8x) versus PCI and PCI-express interfaces being used by newer cards on newer boards... so the much higher bandwith of, e.g., using a Quadro FX1400 with a PCI-E x16 makes it far superior (in my experiences, w/ linux) to the nVidia GeForce 6800 GT..

Re: [PyMOL] loop/coil thickness

2005-07-27 Thread Cameron Mura
Marc, If the pair of images at the bottom of "http://mccammon.ucsd.edu/~cmura/PyMOL/Sandbox/#variableloops"; is what you'd like to do, then modify the "cartoon_loop_radius"... The default for this setting is 0.2, so typing "set cartoon_loop_radius, 0.4" should achieve the desired effect by do

[PyMOL] transparent sticks

2005-07-27 Thread Xavier Deupi
Hi, I want to set some transparency in a selection, which is displayed as sticks. I'm using the following command: cmd.set("stick_transparency",0.5,"ret") # where ret is the selection But when I run the script, ALL the sticks are modified, and not only the selection "ret", as I was expecting

[PyMOL] loop/coil thickness

2005-07-27 Thread Marc Vogt
Hello all I want to increase loop/coil thickness while preserving the standard cartoon for alpha and beta regions. I like the thickness that is a result of "cartoon tube, all", but it removes the regular cartoon depictions in the helical and beta regions. Any ideas? thanks, Marc

[PyMOL] DepthQ Stereo 3D Projector

2005-07-27 Thread Warren DeLano
PyMOL Users -- a New Product FYI: For those in the market for a 3D stereo projecter, InFocus now makes a portable active-stereo 3D projector called the DepthQ that works with shutter-glasses and sells for just $3,995 USD. http://depthq.com/index.html We got a chance to try PyMOL on this device t

[PyMOL] nVidia Quadro FX 1400, FX 3400 and FX 4400 performances

2005-07-27 Thread Philippe BENAS
Hi Xtallographers, Oers and Pymolers, In late January, Warren wrote: "The Quadro FX 3000 is the fastest card I've ever seen PyMOL run on". Well since then half a year is gone. So, would any of you had a chance to compare the FX 1400, FX 3400 and FX 4400 performances for stereo under Linux, I me

Re: [PyMOL] Re: [o-info] KVM purchasing advice

2005-07-27 Thread Leonard Thomas
I have been using a Tripp-Lite 2 port KVM switch now for about 3 years with a whole different combination of platforms and have yet to run into a problem. Len On Wed, 2005-07-27 at 08:48, D. Joe Anderson wrote: > On Fri, Jul 15, 2005 at 01:15:13PM -0700, Cameron Mura wrote: > > > there may be m

[PyMOL] Re: PyMOL-users digest, Vol 1 #958 - 3 msgs

2005-07-27 Thread surendra negi
Yes. You can do this with pymol easily.First open both PDB files in PYMOL. Now go to mounse menu option and click on 3 Button editing mode. Next step double click on any atom of the PDB file which you want to rotate or translate wrt first. Press shift and use left mouse button to rotate or press s

[PyMOL] Re: [o-info] KVM purchasing advice

2005-07-27 Thread D. Joe Anderson
On Fri, Jul 15, 2005 at 01:15:13PM -0700, Cameron Mura wrote: > there may be many O and PyMOL users who use stereo with a monitor > connected through a KVM switch? > >3) would be nice if the KVM, linux boxes, and USB mouse were all > >interoperable. Reason i point this out is that the logitec

[PyMOL] RE: [ccp4bb]: nVidia Quadro FX 1400, FX 3400 and FX 4400 performances

2005-07-27 Thread Wang Chern Hoe
Hi Philippe, If you are using the Windows platform, I suggest you get a Geforce 6800Ultra, and use rivatuner from http://downloads.guru3d.com/download.php?det=163 to modify the driver to Quadro FX 4400 under Windows XP. Thereafter, substitute O with NOC from http://noc.ibp.ac.cn/ and you shoul