On Monday 22 November 2004 18:49, Cameron Mura wrote:
> >Ultimately the mailing list serves as a form of living manual to the
> > program, so it would be nice to preserve as many of these insights as
> > possible!
Well, i have written up and sorted a number of answers to common problems on
my hom
I definitely second Seth's praise for the animation feature. It may seem a
little "hokey" at first, but in presentations it really helps to keep the
viewers in register with the presenter... My only niggle with it is that it
actually moves too fast (on my machine) - any way of throttling it, at
Yo,
I just wrote a really long email to the list. So long
that my web mail secretly logged me out during the time
that I was writing it. The upshot of this is that 1) I am
angry and 2) you are all spared the rambling version and
hopefully get the more succinct version summarized here:
I ha
Peter -
I can't remember if you sent this to the whole list or not (I only have
one sent to me, but if you send it to both places, I get two coppies, and
I often delete one of those), so I appologize in advance if you only sent
it to me.
On Mon, 22 Nov 2004, Peter Haebel wrote:
On Monday
Is it possible to make this an option by means of a switch?
i.e. set mouse_toggle=0 (or 1)
Or manually configure each click-and-release?
I see how it could be useful, however I often double click the left
mouse button randomly when ... thinking ... and in this beta release I
accidentally invo
Hi,
I've heard this from a few people, and the answer seems to be that the new
version of APBS doesn't like chain information in the PyMOL-generated PQR
files. I'll release a new version of the plugin that fixes this soon, but
in the meantime, the easy solution is to remove the chain informa
Hi Michael,
i have just updated to the latest version of apbs-0.3.2 and pymol-0.97 under
debian linux and get the following error messages (see below) + a completely
positively charged protein surface...
using a pqr-file generated at 'http://nbcr.sdsc.edu/pdb2pqr/index.html' of the
same protei
Ultimately the mailing list serves as a form of living manual to the program,
so it would be
nice to preserve as many of these insights as possible!
Thomas' above sentence reminds me -- has anyone thought about a PyMOL
wiki? :-)
Given that one of the points of pymol is to provide a user-frien
Yup. I added it and everything works fine.
A comment on the interaction. Maybe it is my VTK side talking, but I
always intuitively scroll thinking it will zoom the view in/out. Are
the depth cue/clipping planes really of higher importance than being
able to quickly zoom in and ou
More linux woes! Pymol 0.98beta18 built from source gives the following
error on launch:
cm...@euclid cmoad $ pymol
Traceback (most recent call last):
File "/usr/local/lib/python2.3/site-packages/pymol/__init__.py", line
329, in ?
import _cmd
ImportError: /usr/local/lib/python2.3/site-packa
On 20 Nov 2004, at 11:02, Warren DeLano wrote:
Kostas,
Some (all?) Logitech mice come misconfigured with the middle mouse
button
assigned to some goofy proprietary function. You can fix this on
Windows,
but I don't know about Mac. Personally, I no longer buy Logitech
products
for this exa
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