[PyMOL] Moving Objects

2004-05-12 Thread Tony Giannetti
Hey fellow PyMoler's, If you have multiple objects loaded and on screen at once, is it possible to rotate one without rotating the others? I've had success using rotate and translate commands with selections, and it works, but it can be slow with lots of objects. In Swiss-PDB viewer, you are

[PyMOL] 3d plotting in pymol

2004-05-12 Thread Amit Chourasia
Hi, I am trying to use pymol as a 3d plotting tool. I have few questions 1)Is there a way to add represenation in pymol. ? For instance I would like to see the atom as a triangle or nhedron. I was going through CGO objects that looks promising to what I want to accomplish. What I am looking for i

Re: [PyMOL] giving back to the list: summaries on questions posted

2004-05-12 Thread Michael Banck
On Wed, May 12, 2004 at 09:04:11AM -0700, Ezequiel Panepucci wrote: > Because some people prefer to answer mailing list questions directly > to the poster of the question it would be great if the poster would > take a few minutes to compile a summary quoting all the unique answers > he or she recei

RE: [PyMOL] Updated OpenGL Hardware Recommendations

2004-05-12 Thread EPF (Esben Peter Friis)
Daniel, The projection system itself, including non-depolarizing screen, two projectors, projector stacker (ceilling mount or floor/tabletop, depending on you needs), filter holders for the projectors, filters and glasses can be done for less than $10K I bought ours at ProjectorPoint (screen

Re: [PyMOL] loading electrostatic maps generated with apbs

2004-05-12 Thread Michael George Lerner
Hi, This is my fault. The scripts are a bit out of date and my Linux box is broken at the moment, so I haven't been able to bring my code up to date with the most recent PyMOL build. I'll put a warning on my webpage. My electrostatics wizard should still work, but the APBS tools (which are requ

[PyMOL] loading electrostatic maps generated with apbs

2004-05-12 Thread Ken Westover
Has anyone had luck with loading DX format electrostatic potential maps that were generated by APBS? I tried to use the electrostatics wizard and load_dx function created by Michael Lerner (http://www-personal.umich.edu/~mlerner/Pymol/) but I get parsing errors when I try to load a map calculat

[PyMOL] giving back to the list: summaries on questions posted

2004-05-12 Thread Ezequiel Panepucci
Hi All, Because some people prefer to answer mailing list questions directly to the poster of the question it would be great if the poster would take a few minutes to compile a summary quoting all the unique answers he or she received. I have used other lists where this was done and all summaries

Re: [PyMOL] Rotation of maps when aligning

2004-05-12 Thread Tsjerk Wassenaar
Hi Warren, Another (temporary) solution, which shouldn't be too hard to implement, would be the ability of 'glueing' the colors to the object. That is, bind the color for each atom in the object, originating from the map, to that atom. Brings me to a question. Is it currently possible to req