Jason,
The problem is that your script is changing the setting for the specific
object-state by passing it an explicit object name and state number.
cmd.set( "sphere_transparency", str(val), spheres, 0, 1, 1 )
As an important compatibility consideration, I recommend for all API
functions that
Hey folks,
Is this a bug or my incorrect usage of PyMol? (Using 0.95 on a Dual
64-bit Opteron SuSe 9.0 system.)
I used this script (http://vertrees.org/~tree/fade_out.py) to create
some images for a my first super-simple movie
(http://vertrees.org/~tree/output.mpeg).
The image (http://vertree
Ken's answer covers it...the following just provide a little more in-depth
coverage:
What has happened is that PyMOL now supports the picking of multiple atoms,
so use of the lb and rb selections is less necessary. Picking and selecting
are not the same thing in PyMOL. Selections are merely list
The lb and rb selections have changed in version 0.95. Looks like the "new"
way to do this is with pk1 and pk2.
Use ctrl-middle-click, or double-right-click to pick each atom. The first atom
you pick will be pk1, the second will be pk2, etc. (up to pk4).
You can then use ctrl-x to get the dis
Hi,
I had that problem this weekend too. I've found that ctrl right click
picks one atom
and shift right double click picks a second atom. That seems to work
for the 'dist' and 'bond' commands anyway!
Regards,
Carina
On Mon, 12 Apr 2004, Eksterowicz, John wrote:
>
> I am using the latest version
