[PyMOL] Underside of surface color

2003-10-10 Thread Jason Thomas Maynes
Hello: Is there any way to change the color of the underside of a surface. Right now it is a very dark version of the top color. I would like to be able to look at the surface contour from underneath. Thanks in advance. Cheers, JTM "We can be sure that if a detailed understanding of the molec

[PyMOL] make a bond from two different molecule

2003-10-10 Thread Eric Hu
Hi, I am using the newest pymol windows version. I need to make a bond between the protein and ligand since they form a covalent complex. When I use 'bond' command, pymol requires that two bonded atoms are in the same molecule. I have to load two molecules seperately in order to identify the intera

[PyMOL] CGO drawing bug (was Re: Drawing symmetry operators)

2003-10-10 Thread Robert Campbell
* Robert Campbell [2003-10-10 13:04] wrote: P.S. Warren, there is still a problem with drawing CGO cylinders and sausages along the (1,-1,1) direction -- they don't appear unless you ray trace the image: As an example: load 1avv.pdb run draw_symops_cctbx.py draw_symops 1avv One of t

[PyMOL] Drawing symmetry operators

2003-10-10 Thread Robert Campbell
Dear PyMOLers, It was brought to my attention recently that the draw_cell.py and draw_symops_cctbx.py scripts on my web site were broken due to changes in the cctbx interface. It had been a while since I used the scripts myself, and I hadn't kept abreast of Ralf's changes ... Then Warren kindly a