Hi, I am using the newest pymol windows version. I need to make a bond between the protein and ligand since they form a covalent complex. When I use 'bond' command, pymol requires that two bonded atoms are in the same molecule. I have to load two molecules seperately in order to identify the interactions (e.g. hydrogen bond) between them. I wonder if I can unite them into one molecule afterwards to use 'bond' command. Or there is a better way to do it. Thanks!
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