Hi all,
I'm running pymol 0.89 on quite capable machines. When I ray-trace large
pdb files (proteasome; 1pma, 1ryp, 1fnt straight off the pdb), pymol
crashes. Doesn't matter if surface or cartoon representation. When I
decrease the number of subunits from 28 (or 42 in case of 1fnt) to less
than 20
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Hi
Has anyone notice this change in PYMOL 0.89?
When I use the mouse to change the clipping level, the zoom also changes.
This did not happen until I started using the newest version of Pymol.
Also it only seems to happen on Window 2000, but not Windows XP.
-Thanks
David Chimento Uni
Tara,
By default, PyMOL loads models as states rather than as separate
molecular objects. That can make it hard for you to refer to any
particular model. Using a discrete objects helps a bit with
mouse-driven interaction, but the selection language doesn't do too well
with molecular stat
Scott,
Currently they are hard-coded in the C, but can be changed after
loading the molecule using:
alter selection, vdw=number
for example:
alter elem c, vdw=1.8
alter elem n, vdw=1.4
alter elem h, vdw=1.1
etc.
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano,
On Tuesday, June 24, 2003, at 01:32 PM, RichGB wrote:
I'd like to experiment with the rTools 0.5.2 package with PyMol0.88
(MacOSX 10.2.6 using the
PyMol binary from the sourceforge site). But the installation 'hints'
don't appear to describe a
functional method of getting rTools to work with
I'd like to experiment with the rTools 0.5.2 package with PyMol0.88 (MacOSX
10.2.6 using the
PyMol binary from the sourceforge site). But the installation 'hints' don't
appear to describe a
functional method of getting rTools to work with PyMol on this platform. Does
anyone have this
working
Does anyone know of a way to get a ray-traced image of a (sybyl) molcad
surface? I've googled everything I can think of, but I can't find any
information about the format of a molcad surface file (binary, .sld).
Any help would be greatly appreciated.
Best Regards,
Ben
