Re: [PyMOL] PDB SS Question

2003-02-22 Thread Nat Echols
> They are different, especially at the ends of the helixes ... the web SS > seems to have longer helixes than the pdb HELIX info. Is one more > 'correct' than the other? If in doubt, obtain DSSP (it might be installed locally already) and go with whatever it tells you: http://www.cmbi.kun.nl/gv/

[PyMOL] q: create hemisphere

2003-02-22 Thread Bartholomeus Kuettner
Dear PyMol users, I'm looking for a way to create a hemisphere of given xyz coordinates and a specified radius. It seems to me a job for a CGO object. So maybe somebody has been created such a object already and would like to share the details. Thanks, Bartholomeus

[PyMOL] cartoon transparent?

2003-02-22 Thread Kristl Adams
It there a way to make the cartoon round helixes transparent? The transparency command doesn't seem to work on cartoon. Thanks, Kristl kri...@physics.purdue.edu

[PyMOL] PDB SS Question

2003-02-22 Thread Kristl Adams
Following question concerns Secondary Structure of hemoglobin pdb 1BZ0 If the PDB comes with HELIX information do I still need to add the secondary structure from the web (http://www.mbfys.lu.se/Services/SecStr/)? They are different, especially at the ends of the helixes ... the web SS seems to h