Re: [PyMOL] Loading non-standard PDB file

2002-03-08 Thread Holly Miller
Warren, Thanks for the quick reply! > >Right now PyMOL has pretty limited connectivity detection > capabilities for "in-process" structures, which do not exhibit normal > bond lengths and atom separations. A workaround would be to passage > the structure through energy minimization (using a

RE: [PyMOL] Loading non-standard PDB file

2002-03-08 Thread DeLano, Warren
Holly, Right now PyMOL has pretty limited connectivity detection capabilities for "in-process" structures, which do not exhibit normal bond lengths and atom separations. A workaround would be to passage the structure through energy minimization (using an external tool) before loading it into

[PyMOL] Loading non-standard PDB file

2002-03-08 Thread Holly Miller
Hi! I am a new PyMol user. I want to look at an 'in progress' structure from a collaborator. When I load the pdb into PyMol there are bonds between atoms that shouldn't be bonded. This is mostly (if not only) in the bound DNA part of the structure. Is it possible to change the parameters by which

Re: [PyMOL] install

2002-03-08 Thread Alan Wilter Sousa da Silva
I think ir you install Python 2.1 or you wait Pymol compiled to Python 2.2. On Thu, 7 Mar 2002, Fei Xu wrote: > Hi! Everyone: > I am installing pymol.My versioin is 0.78 for window. I use python2.2. > When I run pymol , it saiys that it can't find python21.dll. > what should I do? does it requir