Hi out there,
Pymol is really amazing, I started to write a module to create and
manipulate densities for pymol.
Is it possible to create surfaces from contours (additional to isomesh and
isodot) something like isosurf ???
Ingo
--
In
Warren, I've used Varshney's surface code (written at UNC)
for many years now. There are some legal statements but I
checked with UNC and they told me they didn't care who used
copied or modified the code, so I consider it public domain
at this point. I would be happy to send you a copy. It is
C-co
Now, on to Alan's specific questions:
> I'm particularly interested in how pymol generate surface (a
> internal algorithm?) and how to compare it to vdW, solvent,
> Connolly and
> MSMS surfaces.
PyMOL's surfacing algorithm is just something I cooked up over a weekend
a couple years back.
All PyMOL users please read.
> From: Alan Wilter Sousa da Silva [mailto:a...@biof.ufrj.br]
> PyMol is really amazing. Besides what we can do with it now,
> there is a great potential of evolution.
That is the key difference between PyMOL and any comparable
closed-source project. PyMOL can
Hi List,
PyMol is really amazing. Besides what we can do with it now,
there is a great potential of evolution.
I'm particularly interested in how pymol generate surface (a
internal algorithm?) and how to compare it to vdW, solvent, Connolly and
MSMS surfaces. Moreover, I know Del
Ricardo,
Your suggestion sounds great -- enable creation of atom selections based
on map value. Here is a further refinement:
select (prot and map1 < 1)
select (prot and map1 1 3)
select (prot and map1 >= 3)
select (prot and map1 = 5)
Unfortunately, the code isn't yet written, but it won't tak
Dear users,
I would like to select atoms from file.pdb which are - at the same time
- inside the volume of a map.
In other words, I would like to make to make a selection like:
select file.pdb AND map.ccp4
I would like to know what would be the correct way to do it in PyMOL.
Many thanks in ad
Hi,
I am a new PyMOL user and I am impressed indeed by the characteristics of this
program!
Since I am about preparing a paper, I would like to include some pictures
prepared with PyMOL.
I have a complex ligand/protein and I would like to show the hydrogen bonds
interaction between them.
I l
