Re: [Open Babel] Strange problem with non-root users

Thanks for the hints For the purpose of archive, let me post what makes it to work, there was a conflict with BABEL_DATADIR and BABEL_LIBDIR assignment with earlier installation of "avogadro" Thanks a lot On 22 September 2010 12:21, wrote: > Check the directories permissions, this is was wha

Re: [Open Babel] Strange problem with non-root users

Check the directories permissions, this is was what happened to me (only root permissions in the file definitions files). Best regardas. > > Dear Babel User, > Recently i installed babel through yast (SuSe 11.3), > however i got similar problem like the one posted in this thr

Re: [Open Babel] Strange problem with non-root users (with SuSE package)

Hi Andri, If I understand you correctly, you have no other installation of Open Babel on your computer system apart from the one installed through YaST, and that one is not working correctly. The Open Babel bundled with the various Linux distributions is prepared by volunteers at SuSE, Debian, Fe

Re: [Open Babel] Strange problem with non-root users

Dear Babel User, Recently i installed babel through yast (SuSe 11.3), however i got similar problem like the one posted in this thread before. When i give "sudo babel -H" it prints all the file formats " The following file formats are recognized: acr -- ACR form

Re: [Open Babel] Strange problem with non-root users

On 24 March 2010 07:56, David García Aristegui wrote: > Is not a stupid question at all... > > r...@thema:/biodata2/software/openbabel-2.2.3# locate smilesformat.so > > /biodata2/software/openbabel-2.2.3/src/formats/.libs/smilesformat.so > /biodata2/software/openbabel-2.2.3/src/formats/.libs/smile

Re: [Open Babel] Strange problem with non-root users

Is not a stupid question at all... r...@thema:/biodata2/software/openbabel-2.2.3# locate smilesformat.so /biodata2/software/openbabel-2.2.3/src/formats/.libs/smilesformat.so /biodata2/software/openbabel-2.2.3/src/formats/.libs/smilesformat.soT /usr/local/lib/openbabel/2.2.3/smilesformat.so --- T

Re: [Open Babel] Strange problem with non-root users

On Wed, Mar 24, 2010 at 3:43 PM, Igor Filippov wrote: > Sorry for a stupid question - is the directory with all the format > shared libs readable by a non-root user? > Check where you have smilesformat.so for example. Do you get similar results when doing this: t...@ubuntu:~/openbabel-2010/build

Re: [Open Babel] Strange problem with non-root users

Sorry for a stupid question - is the directory with all the format shared libs readable by a non-root user? Check where you have smilesformat.so for example. Igor On Wed, 2010-03-24 at 10:35 -0400, David García Aristegui wrote: > Working with a fresh OpenBabel 2.2.3 installation... There are no

Re: [Open Babel] Strange problem with non-root users

Working with a fresh OpenBabel 2.2.3 installation... There are no diferences related with BABEL* variables, they are not defined. PATH: i "force" to run the same executable (there is one babel installation at this time), and i retrieve different outputs with different users. A problem detected: wi

Re: [Open Babel] Strange problem with non-root users

On 3/24/10 2:24 AM, David García Aristegui wrote: > Same input file prop.smi (CCC), and in the examples of my user prop.smi > is owned by "aristegui" > > With root: > > r...@thema:/tmp/test_dir_1# babel --gen3D -ismi prop.smi -osdf prop.sdf > 1 molecule converted > 1 info messages 55 audit log mess

Re: [Open Babel] Strange problem with non-root users (reinstallation)

After a new OpenBabel 2.2.3 reinstallation i have the same problem... ariste...@thema:/tmp/test_dir_2$ babel --gen3D -ismi prop.smi -osdf prop2.sdf babel: cannot read input format! Open Babel 2.2.3 -- Mar 24 2010 -- 11:52:35 Usage: babel [-i] [-o] Try -H option for more information. El mié, 2

Re: [Open Babel] Strange problem with non-root users

Same input file prop.smi (CCC), and in the examples of my user prop.smi is owned by "aristegui" With root: r...@thema:/tmp/test_dir_1# babel --gen3D -ismi prop.smi -osdf prop.sdf 1 molecule converted 1 info messages 55 audit log messages 1 debugging messages and a proper prop.sdf with 3D coordi

Re: [Open Babel] Strange problem with non-root users

On Tue, Mar 23, 2010 at 8:08 PM, David García Aristegui wrote: > Hello, OB is installed on /usr/bin/babel /usr/local/bin/babel > The BABEL_LIBDIR is not set (for root or the others). Sorry for all the questions, but it's hard to guess what's wrong... Do you have two versions of OB installed? Doe

Re: [Open Babel] Strange problem with non-root users

Hello, OB is installed on /usr/bin/babel /usr/local/bin/babel The BABEL_LIBDIR is not set (for root or the others). Best regards. El mar, 23-03-2010 a las 20:03 +0100, Tim Vandermeersch escribió: > Hi, > > On Tue, Mar 23, 2010 at 7:29 PM, David García Aristegui > wrote: > > Hello, i have a str

Re: [Open Babel] Strange problem with non-root users

El mar, 23-03-2010 a las 20:03 +0100, Tim Vandermeersch escribió: > BABEL_LIBDIR -- Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune appli

Re: [Open Babel] Strange problem with non-root users

Hi, On Tue, Mar 23, 2010 at 7:29 PM, David García Aristegui wrote: > Hello, i have a strange problem with non-root users and OpenBabel, and > tested with two different versions of the program: > > Open Babel 2.2.3 -- Jan 18 2010 > Open Babel 2.2.0 -- Jul 17 2008 > > OB is installed in a PC with U