On 3/24/10 2:24 AM, David García Aristegui wrote:
> Same input file prop.smi (CCC), and in the examples of my user prop.smi
> is owned by "aristegui"
>
> With root:
>
> r...@thema:/tmp/test_dir_1# babel --gen3D -ismi prop.smi -osdf prop.sdf
> 1 molecule converted
> 1 info messages 55 audit log messages 1 debugging messages
>
> and a proper prop.sdf with 3D coordinates is generated
>
> With my user:
>
> ariste...@thema:/tmp/test_dir_2$ /usr/bin/babel --gen3D -ismi prop.smi
> -osdf prop.sdf
>
> babel: cannot read input format!
> Open Babel 2.2.0 -- Jul 17 2008 -- 11:53:19
> Usage: babel [-i<input-type>]<name> [-o<output-type>]<name>
> Try -H option for more information.
>
> ariste...@thema:/tmp/test_dir_2$ /usr/local/bin/babel --gen3D -ismi
> prop.smi -osdf prop.sdf
>
> babel: cannot read input format!
> Open Babel 2.2.3 -- Jan 18 2010 -- 13:11:01
> Usage: babel [-i<input-type>]<name> [-o<output-type>]<name>
> Try -H option for more information.
>
> babel: cannot read input format!
> Open Babel 2.2.0 -- Jul 17 2008 -- 11:53:19
> Usage: babel [-i<input-type>]<name> [-o<output-type>]<name>
> Try -H option for more information.
>
> Thank you for your help!!!
>
> El mar, 23-03-2010 a las 20:39 +0100, Tim Vandermeersch escribió:
>> On Tue, Mar 23, 2010 at 8:08 PM, David GarcÃa Aristegui
>> <ariste...@cbm.uam.es> wrote:
>>> Hello, OB is installed on /usr/bin/babel /usr/local/bin/babel
>>> The BABEL_LIBDIR is not set (for root or the others).
>>
>> Sorry for all the questions, but it's hard to guess what's wrong...
>>
>> Do you have two versions of OB installed?
>> Does "/usr/bin/babel -H" produce the same results as
>> "/usr/local/bin/babel -H"?
>> Does /usr/local/bin versus /usr/bin have the same priority for user&
>> root? (i.e. are they in the same order in PATH env. var.)
>>
>>> Best regards.
>>>
>>> El mar, 23-03-2010 a las 20:03 +0100, Tim Vandermeersch escribió:
>>>> Hi,
>>>>
>>>> On Tue, Mar 23, 2010 at 7:29 PM, David GarcÃa Aristegui
>>>> <ariste...@cbm.uam.es> wrote:
>>>>> Hello, i have a strange problem with non-root users and
>> OpenBabel,
>>>> and
>>>>> tested with two different versions of the program:
>>>>>
>>>>> Open Babel 2.2.3 -- Jan 18 2010
>>>>> Open Babel 2.2.0 -- Jul 17 2008
>>>>>
>>>>> OB is installed in a PC with Ubuntu 8x (Hardy Neron)
>>>>> Linux 2.6.27-14-server (the root account is activated).
>>>>>
>>>>> My problem: with non-root users i always retrieve an
>>>>> "babel: cannot read input format!" error, even if the file is
As root, then a regular user, type:
env | sort
and look for differences. The environment variables of interest are
BABEL_* (any variable with BABEL_ prefix)
LD_LIBRARY_PATH
PATH
Or alternatively, look for these same variables in your shell-initialization
scripts (.cshrc for csh, .bash_profile and .bash_rc for bash, but I don't
remember which one Cygwin uses).
Craig
------------------------------------------------------------------------------
Download Intel® Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
