Re: [Open Babel] .sdf and .fs files (substructure search)

2012-02-01 Thread David García Aristegui
Thank you very much, Noe and Chris!!! > In making the .fs index you meant to write > >obabel 1.7_24.sdf -ofs > > In using it to look for three connected aliphatic carbons you can use > >obabel 1.7_24.fs -sCCC -Oresults.smi > or >obabel 1.7_24.sdf -ifs -sCCC -Oresults.smi > > and it is

Re: [Open Babel] .sdf and .fs files (substructure search)

2012-02-01 Thread Chris Morley
In making the .fs index you meant to write obabel 1.7_24.sdf -ofs In using it to look for three connected aliphatic carbons you can use obabel 1.7_24.fs -sCCC -Oresults.smi or obabel 1.7_24.sdf -ifs -sCCC -Oresults.smi and it is necessary for the data .sdf and the index files to be in

Re: [Open Babel] .sdf and .fs files (substructure search)

2012-02-01 Thread Noel O'Boyle
The .fs file is just an index - it doesn't contain any chemical structure. So you need the sdf file. Can they be in different directories? I don't know...Chris? - Noe On 1 February 2012 15:40, David García Aristegui wrote: > Hello, i'm testing the substructure search with .fs files... > > obabe