The .fs file is just an index - it doesn't contain any chemical
structure. So you need the sdf file.

Can they be in different directories? I don't know...Chris?

- Noe

On 1 February 2012 15:40, David García Aristegui <ariste...@cbm.uam.es> wrote:
> Hello, i'm testing the substructure search with .fs files...
>
> obabel 1.7_24.fs -ofs
>
> i move the .fs file to a new directory, and i execute:
>
> obabel 1.7_24.fs -ifs -sCCC -Oresults.smi
> ==============================
> *** Open Babel Error  in ReadChemObject
>  Difficulty opening 1.7_24.sdf
>
> 0 molecules converted
>
> "The datafile plus the -ifs  option can be used instead of the index file"
> http://openbabel.org/docs/dev/FileFormats/Fastsearch_format.html
>
> Is mandatory to have the .sdf and the .fs files in the same directory? is
> not possible to do the search only with the .fs files?
>
> Best regards.
>
>
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