Re: [Open Babel] Using openbabel.py to generate InChIKey with reconnect metal option

2011-12-10 Thread Chris Morley
On 09/12/2011 19:44, Noel O'Boyle wrote: > Or more succintly, with obabel 2.3.1 I have: > > C:\Users\Noel>obabel -:[Al]C#N -oinchi -xK -xX Recmet > == > *** Open Babel Warning in InChI code >#1 :Metal was disconnected > ♥ > 1 molecule converted > > ...which is rathe

Re: [Open Babel] Using openbabel.py to generate InChIKey with reconnect metal option

2011-12-09 Thread Noel O'Boyle
Or more succintly, with obabel 2.3.1 I have: C:\Users\Noel>obabel -:[Al]C#N -oinchi -xK -xX Recmet == *** Open Babel Warning in InChI code #1 :Metal was disconnected ♥ 1 molecule converted ...which is rather sweet, but probably not the desired outcome. :-) Do you h

[Open Babel] Using openbabel.py to generate InChIKey with reconnect metal option

2011-12-09 Thread Ken Smith
Folks I'm trying to use Openbabel to generate a non-standard InChIKey for a few of my metal cyanides and isocyanides (because configurations produce the same Standard InChIKey). Below is my code. Execution of the code leaving the comments intact yields the Standard InChI and Standard InChIKey