Re: [Open Babel] Substructure searching with multiple molecules

2017-08-17 Thread Geoffrey Hutchison
It's a little hard to give advice on your error without seeing the code. Can you post the code, e.g. via gist or Pastebin? Best regards, -Geoff --- Prof. Geoffrey Hutchison Department of Chemistry University of Pittsburgh tel: (412) 648-0492 email: geo...@pitt.edu web: http://hutchison.chem.pitt

[Open Babel] Substructure searching with multiple molecules

2017-08-17 Thread Marcos Vinicius Da Silva Santana
Hello, I'm using OpenBabel for substructure searching of 15000 fragments against a lead-like dataset. Is there a way to do that using Pybel? On the tutorial it only describes how to do that with one molecule. I tried to iterate over a list of smiles/smarts of my fragments but I get a segmentation e