It's a little hard to give advice on your error without seeing the code. Can 
you post the code, e.g. via gist or Pastebin?

Best regards,
-Geoff

---
Prof. Geoffrey Hutchison
Department of Chemistry
University of Pittsburgh
tel: (412) 648-0492
email: geo...@pitt.edu
web: http://hutchison.chem.pitt.edu/

> I'm using OpenBabel for substructure searching of 15000 fragments against a 
> lead-like dataset. Is there a way to do that using Pybel? On the tutorial it 
> only describes how to do that with one molecule. I tried to iterate over a 
> list of smiles/smarts of my fragments but I get a segmentation error.


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