Re: [Open Babel] Substructure searching (large datasets) .sdf format doubt

2012-01-11 Thread David García Aristegui
Thank you very much, Noel and Chris. Best regards. > On 11/01/2012 14:23, David García Aristegui wrote: >> "First of all, you need to create a fastsearch index (see above). The >> index is created with the following command: >> >> babel mymols.sdf -ofs" >> >> http://openbabel.org/docs/dev/Fingerpr

Re: [Open Babel] Substructure searching (large datasets) .sdf format doubt

2012-01-11 Thread Chris Morley
On 11/01/2012 14:23, David García Aristegui wrote: > "First of all, you need to create a fastsearch index (see above). The > index is created with the following command: > > babel mymols.sdf -ofs" > > http://openbabel.org/docs/dev/Fingerprints/fingerprints.html > > Could you please tell me the diff

Re: [Open Babel] Substructure searching (large datasets) .sdf format doubt

2012-01-11 Thread Noel O'Boyle
FP2 is a Daylight-type fingerprint. It is based only on connectivity, and does not incorporate any stereochemical information, so 2D or 3D structures will give the same results. - Noel On 11 January 2012 14:23, David García Aristegui wrote: > "First of all, you need to create a fastsearch index

[Open Babel] Substructure searching (large datasets) .sdf format doubt

2012-01-11 Thread David García Aristegui
"First of all, you need to create a fastsearch index (see above). The index is created with the following command: babel mymols.sdf -ofs" http://openbabel.org/docs/dev/Fingerprints/fingerprints.html Could you please tell me the differences between the use of a 2D or a 3D sdf file regarding the .