FP2 is a Daylight-type fingerprint. It is based only on connectivity,
and does not incorporate any stereochemical information, so 2D or 3D
structures will give the same results.

- Noel

On 11 January 2012 14:23, David García Aristegui <ariste...@cbm.uam.es> wrote:
> "First of all, you need to create a fastsearch index (see above). The
> index is created with the following command:
>
> babel mymols.sdf -ofs"
>
> http://openbabel.org/docs/dev/Fingerprints/fingerprints.html
>
> Could you please tell me the differences between the use of a 2D or a 3D
> sdf file regarding the .fs generation?
>
> Kind regards.
>
>
>
>
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