I had tremendous troubles install the python bindings on Yosemite with error
messages similar to the above. I tracked down the problem to conflicts
between homebrew and macports versions of python that were both installed on
my system. I finally got this to work by completely de-installing macport
Dear Geoff,for your convenience, I’ve included my CMakeCache.txt file from the build directory.# This is the CMakeCache file.
# For build in directory: /usr/local/src/openbabel-2.3.2/build
# It was generated by CMake: /usr/local/Cellar/cmake/2.8.12/bin/cmake
# You can edit this file to change value
I have traced the segmentation fault issue to pull request #31 that was merged
yesterday:
https://github.com/openbabel/openbabel/pull/31
In particular, the two occurrences of `delete expr1` that were added in
parsmart.cpp are causing the issue. Removing them seems to fix everything.
Also, I not
Thanks Matt,
your homebrew alternative works perfect!
Hans
On 31 Oct 2013, at 16:39, Matt Swain wrote:
> I am also having this problem when compiling on Mavericks. I believe it is
> because Mavericks changes the default C++ library from libstdc++ to libc++.
>
> libc++ provides a C++11 libra
I am also having this problem when compiling on Mavericks. I believe it is
because Mavericks changes the default C++ library from libstdc++ to libc++.
libc++ provides a C++11 library, whereas libstdc++ provides a C++03 library
with tr1 support. There are some useful details here:
http://marshal
Hi,
IIRC, I got the same error (i.e. tr1/memory header not found) once when I
tried to compile with the c++11 standard. Does clang use c++11 as default
standard on OSX10.9?
Tim
On Thu, Oct 31, 2013 at 4:18 PM, Hans De Winter wrote:
> Geoff,
>
> even the master gives me the same issue:
>
> Her
Geoff,
even the master gives me the same issue:
Here is the output from the cmake .. command:
hans$ export EIGEN=/usr/local/src/eigen-eigen-b23437e61a07
hans$ cmake -DCMAKE_INSTALL_PREFIX=/usr/local/openbabel
-DEIGEN2_INCLUDE_DIR=$EIGEN ..
-- Using included inchi library.
-- Found LibXml2: /usr
I'd recommend trying Git master. I'm intending to make a 2.3.3 stable release
at some point, so I will try to track down the problem.
But as I said, I know that the latest development code compiles cleanly.
-Geoff
--
And
On 10/31/2013 09:40 AM, Francois Berenger wrote:
> On 10/30/2013 10:04 PM, Hans De Winter wrote:
>> Hi all,
>>
>> has anyone already has experience with compiling OpenBabel 2.3.2 under
>> OS X 10.9 (Maverick)?
>
> Isn't Open Babel available under homebrew for OS X?
>
> https://github.com/mxcl/homeb
On 10/30/2013 10:04 PM, Hans De Winter wrote:
> Hi all,
>
> has anyone already has experience with compiling OpenBabel 2.3.2 under
> OS X 10.9 (Maverick)?
Isn't Open Babel available under homebrew for OS X?
https://github.com/mxcl/homebrew
> I tried it (after installing the XCode and Developer t
> has anyone already has experience with compiling OpenBabel 2.3.2 under OS X
> 10.9 (Maverick)?
I’m obviously compiling “master” but my laptop uses Mavericks and there’s no
problem.
Are you using boost? This should be un-necessary. Can you send me the
CMakeCache file from your build directory
Hi all,
has anyone already has experience with compiling OpenBabel 2.3.2 under OS X
10.9 (Maverick)?
I tried it (after installing the XCode and Developer tools, as well as cmake
and pkg-config from Homebrew) and got the following:
In file included from
/usr/local/src/openbabel-2.3.2/include/o
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