Re: [Open Babel] Creating a molecule from scratch (Python)

2015-04-14 Thread Noel O'Boyle
You'll have to be a bit more specific and provide a minimal test case that illustrates which exactly is the problem. Otherwise, the only answer is that you should take a look at pdbformat.cpp and see what the reader does. - Noel On 10 April 2015 at 21:29, Stefano Forli wrote: > Hi, > > I'm havin

[Open Babel] Creating a molecule from scratch (Python)

2015-04-10 Thread Stefano Forli
Hi, I'm having a few problems in creating molecules from scratch in Python (see attached code) My code creates a molecule by creating atoms from coordinates, elements and bonds. The main issue is that I get different atom types than I would get by parsing a simple PDB created with same coordin