Re: [Open Babel] New group contribution plugin for Celcius melting point

2012-07-06 Thread Rajarshi Guha
__ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > > -- Rajarshi Guha | http://blog.rguha.net NIH Center for Advancing Translational Science ---

[Open Babel] FP2/FP3 parser

2012-05-15 Thread Rajarshi Guha
in my R fingerprint package) -- Rajarshi Guha | http://blog.rguha.net NIH Center for Advancing Translational Science -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security a

[Open Babel] silicos website down?

2011-07-19 Thread Rajarshi Guha
is the silicos website down? Are sieve and pharo hosted anywhere else? -- Rajarshi Guha NIH Chemical Genomics Center -- Magic Quadrant for Content-Aware Data Loss Prevention Research study explores the data loss

Re: [Open Babel] Python module fails when OB is compiled from latest SVN

2011-05-08 Thread Rajarshi Guha
On Sat, May 7, 2011 at 6:36 AM, Noel O'Boyle wrote: > Can you show the cmake configure you used? (Did you compile the Python > bindings? You might be trying to use old bindings against new shared > libraries.) > > - Noel > > On 6 May 2011 23:48, Rajarshi Guha wrote: &

[Open Babel] Python module fails when OB is compiled from latest SVN

2011-05-06 Thread Rajarshi Guha
/Library/Python/2.5/site-packages/_openbabel.so, 2): Symbol not found: __ZN9OpenBabel10OBUnitCell13GetCellMatrixEv Referenced from: /Library/Python/2.5/site-packages/_openbabel.so Expected in: /usr/local/openbabel/lib/libopenbabel.4.dylib Has anyb

[Open Babel] EEM charges in the spectrophore code

2010-11-11 Thread Rajarshi Guha
__ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> > > ---

Re: [Open Babel] State of the Art in Synthetic Accessibility?

2010-11-03 Thread Rajarshi Guha
xity could be limiting. But I'm not active in this area so I may be totally off base :) -- Rajarshi Guha NIH Chemical Genomics Center -- Achieve Improved Network Security with IP and DNS Reputation. Defend agai

Re: [Open Babel] State of the Art in Synthetic Accessibility?

2010-11-03 Thread Rajarshi Guha
hpdev2dev-nov > ___ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > -- Rajarshi Guha NIH Chemical Genomics Center

Re: [Open Babel] OS X compilation problems, for Python bindings

2010-08-30 Thread Rajarshi Guha
x.hyb == 3, atoms)) nsp2 = len(filter(lambda x: x.atomicnum == 6 and x.hyb == 2, atoms)) ratio = nsp3/float(nsp2+nsp3) print mol.title, ratio On Mon, Aug 30, 2010 at 1:04 PM, Rajarshi Guha wrote: > Thanks for the pointer, that seemed to work. It's working now (thouhg > I

Re: [Open Babel] OS X compilation problems, for Python bindings

2010-08-30 Thread Rajarshi Guha
pt for a "v3" dylib. > Something is picking that up. > > Hope that helps, > -Geoff -- Rajarshi Guha NIH Chemical Genomics Center -- This SF.net Dev2Dev email is sponsored by: Show off your parallel

Re: [Open Babel] OS X compilation problems, for Python bindings

2010-08-30 Thread Rajarshi Guha
r/local/openbabel/lib/libopenbabel.4.0.0.dylib /usr/local/openbabel/lib/libopenbabel.4.dylib /usr/local/openbabel/lib/libopenbabel.dylib generating a symlink to satisfy the error doesn't help - I get a missing symbo

[Open Babel] OS X compilation problems, for Python bindings

2010-08-30 Thread Rajarshi Guha
Reason: image not found I now realize that Openbabel is using Python 2.6 which I have in addition to 2.5. Is there a way I can force it to compile with 2.5? Thanks -- Rajarshi Guha NIH Chemical Genomics Center -- Sell a

Re: [Open Babel] latest SVN doesn't compile Python extensions

2010-08-29 Thread Rajarshi Guha
On Aug 29, 2010, at 5:25 PM, Noel O'Boyle wrote: > On 29 August 2010 21:49, Rajarshi Guha > wrote: >> >> On Aug 29, 2010, at 5:31 AM, Noel O'Boyle wrote: >> >>> Hi Rajarshi >>> >>> It seems that the problem was in generating the

Re: [Open Babel] latest SVN doesn't compile Python extensions

2010-08-29 Thread Rajarshi Guha
mac ports > > I've never had to specify this but there is an additional option, > "-DSWIG_DIR" which on my Windows system points to "swigwin-2.0.0/Lib", > which hopefully will do the trick. I'll try this out thanks ---

[Open Babel] latest SVN doesn't compile Python extensions

2010-08-28 Thread Rajarshi Guha
ake[1]: *** [scripts/CMakeFiles/_openbabel.dir/all] Error 2 make: *** [all] Error 2 As far as I can tell, python.swg is not in the source tree. Any pointers would be appreciated -- Rajarshi Guha NIH Chemical Genomics Center --

Re: [Open Babel] openbabel web service

2010-04-13 Thread Rajarshi Guha
ns for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > ___ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://l

Re: [Open Babel] SMARTS with optional branches

2009-11-16 Thread Rajarshi Guha
ore capable and which might support this, but my > recollection is they are a lot more verbose, and I can't think of any > references off-hand. > MQL (http://en.wikipedia.org/wiki/Molecular_Query_Language) might support this, but as Andrew pointed out, it can be quite a bit more verbo