[jira] [Updated] (CTAKES-533) Cannot create custom words with "." in the custom BSV file

[ https://issues.apache.org/jira/browse/CTAKES-533?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-533: -- Issue Type: Improvement (was: Bug) > Cannot create custom words with "." in the custom BSV file >

[jira] [Commented] (CTAKES-555) Unable to run negation pipeline

[ https://issues.apache.org/jira/browse/CTAKES-555?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653200#comment-17653200 ] Sean Finan commented on CTAKES-555: --- If you are using the Uima Cas Visual Debugger (CVD

[jira] [Commented] (CTAKES-539) cTakes 4.0 installation error

[ https://issues.apache.org/jira/browse/CTAKES-539?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653201#comment-17653201 ] Sean Finan commented on CTAKES-539: --- I added a bridge to use a piper file in the CVD. 

[jira] [Closed] (CTAKES-539) cTakes 4.0 installation error

[ https://issues.apache.org/jira/browse/CTAKES-539?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-539. - Fix Version/s: future enhancement Assignee: Sean Finan Resolution: Workaround I added a b

[jira] [Commented] (CTAKES-538) DBCollectionReader throwing an exception while running a piper file

[ https://issues.apache.org/jira/browse/CTAKES-538?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653203#comment-17653203 ] Sean Finan commented on CTAKES-538: --- Parameters cannot have spaces between the paramete

[jira] [Closed] (CTAKES-538) DBCollectionReader throwing an exception while running a piper file

[ https://issues.apache.org/jira/browse/CTAKES-538?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-538. - Fix Version/s: 4.0.1 Assignee: Sean Finan Resolution: Information Provided Improper use o

[jira] [Commented] (CTAKES-490) cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor

[ https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653205#comment-17653205 ] Sean Finan commented on CTAKES-490: --- Moved runCPE and runCVD profiles to ctakes-example

[jira] [Closed] (CTAKES-490) cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor

[ https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-490. - Fix Version/s: future enhancement (was: 4.0.0) Assignee: Sean Finan (was:

[jira] [Closed] (CTAKES-453) Unable to run CVD locally

[ https://issues.apache.org/jira/browse/CTAKES-453?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-453. - Fix Version/s: future enhancement Assignee: Sean Finan Resolution: Fixed Moved runCVD fro

[jira] [Commented] (CTAKES-490) cTAKES 4.0.1-SNAPSHOT - Problem with CVD and AggregatePlaintextFastUMLSProcessor

[ https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653212#comment-17653212 ] ASF subversion and git services commented on CTAKES-490: Commit 8

[jira] [Commented] (CTAKES-453) Unable to run CVD locally

[ https://issues.apache.org/jira/browse/CTAKES-453?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653211#comment-17653211 ] ASF subversion and git services commented on CTAKES-453: Commit 8

[jira] [Updated] (CTAKES-158) DateAnnotation bug when two dates directly adjacent

[ https://issues.apache.org/jira/browse/CTAKES-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-158: -- Priority: Minor (was: Major) > DateAnnotation bug when two dates directly adjacent > -

[jira] [Updated] (CTAKES-557) remove log4jv1 dependency

[ https://issues.apache.org/jira/browse/CTAKES-557?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-557: -- Priority: Critical (was: Major) > remove log4jv1 dependency > - > >

[jira] [Updated] (CTAKES-557) remove log4jv1 dependency

[ https://issues.apache.org/jira/browse/CTAKES-557?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-557: -- Priority: Major (was: Critical) > remove log4jv1 dependency > - > >

[jira] [Closed] (CTAKES-555) Unable to run negation pipeline

[ https://issues.apache.org/jira/browse/CTAKES-555?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-555. - Assignee: Sean Finan Resolution: Information Provided 1 year old, no further information from user.

[jira] [Commented] (CTAKES-484) Unused or out-of-project references

[ https://issues.apache.org/jira/browse/CTAKES-484?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653214#comment-17653214 ] Sean Finan commented on CTAKES-484: --- The listed local file references are in training a

[jira] [Updated] (CTAKES-484) Unused or out-of-project references

[ https://issues.apache.org/jira/browse/CTAKES-484?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-484: -- Priority: Trivial (was: Major) > Unused or out-of-project references > ---

[jira] [Updated] (CTAKES-484) Unused or out-of-project references

[ https://issues.apache.org/jira/browse/CTAKES-484?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-484: -- Issue Type: Task (was: Bug) > Unused or out-of-project references > --

[jira] [Closed] (CTAKES-484) Unused or out-of-project references

[ https://issues.apache.org/jira/browse/CTAKES-484?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-484. - Assignee: Sean Finan (was: Alex Zbarcea) Resolution: Not A Problem local file references are in tr

[jira] [Updated] (CTAKES-478) Subject detection doesn't work if we use Posessive 's

[ https://issues.apache.org/jira/browse/CTAKES-478?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-478: -- Issue Type: Improvement (was: Bug) > Subject detection doesn't work if we use Posessive 's > -

[jira] [Updated] (CTAKES-477) Negative adjetives doesn't work for all the preposition indicated on the documentation

[ https://issues.apache.org/jira/browse/CTAKES-477?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-477: -- Issue Type: Improvement (was: Bug) > Negative adjetives doesn't work for all the preposition indicated

[jira] [Updated] (CTAKES-475) Negation particles are not detected as negation.

[ https://issues.apache.org/jira/browse/CTAKES-475?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-475: -- Issue Type: Improvement (was: Bug) > Negation particles are not detected as negation. > -

[jira] [Commented] (CTAKES-452) ctakes-template-filler (RelationExtractorAggregateWithoutOrangeBook.xml) refers to a non-existing file

[ https://issues.apache.org/jira/browse/CTAKES-452?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653217#comment-17653217 ] Sean Finan commented on CTAKES-452: --- There should be no problem with this using piper f

[jira] [Closed] (CTAKES-452) ctakes-template-filler (RelationExtractorAggregateWithoutOrangeBook.xml) refers to a non-existing file

[ https://issues.apache.org/jira/browse/CTAKES-452?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-452. - Fix Version/s: 4.0.0 Assignee: Sean Finan (was: James Joseph Masanz) Resolution: Workarou

[jira] [Updated] (CTAKES-434) Add /Edit @PipeBitInfo Annotations to cr, ae and cc classes

[ https://issues.apache.org/jira/browse/CTAKES-434?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-434: -- Priority: Minor (was: Major) > Add /Edit @PipeBitInfo Annotations to cr, ae and cc classes > -

[jira] [Closed] (CTAKES-328) Clean up XML Annotator Descriptors

[ https://issues.apache.org/jira/browse/CTAKES-328?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-328. - Fix Version/s: future enhancement 4.0.0 (was: 3.2.3) Reso

[jira] [Closed] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters

[ https://issues.apache.org/jira/browse/CTAKES-155?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-155. - Assignee: Sean Finan Resolution: Workaround There are newer sectionizers that can be used instead o

[jira] [Closed] (CTAKES-231) missing NEs because of inconsistent chunking for parallel sentence constructions

[ https://issues.apache.org/jira/browse/CTAKES-231?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-231. - Fix Version/s: 4.0.0 Assignee: Sean Finan Resolution: Workaround The fast dictionary look

[jira] [Updated] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator

[ https://issues.apache.org/jira/browse/CTAKES-172?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-172: -- Priority: Minor (was: Trivial) > relation-extractor is using StatusAnnotator and NegationAnnotator ins

[jira] [Updated] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator

[ https://issues.apache.org/jira/browse/CTAKES-172?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan updated CTAKES-172: -- Priority: Trivial (was: Major) > relation-extractor is using StatusAnnotator and NegationAnnotator ins

[jira] [Closed] (CTAKES-422) Correct username and password but getting error Unknown host exception: uts-ws.nlm.nih.gov

[ https://issues.apache.org/jira/browse/CTAKES-422?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-422. - Assignee: Sean Finan Resolution: Not A Problem This looks like a firewall, proxy, intellij issue. 

[jira] [Commented] (CTAKES-422) Correct username and password but getting error Unknown host exception: uts-ws.nlm.nih.gov

[ https://issues.apache.org/jira/browse/CTAKES-422?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653223#comment-17653223 ] Sean Finan commented on CTAKES-422: --- This looks like a firewall, proxy, intellij issue.

[jira] [Closed] (CTAKES-408) Loading the AE using UMLS credentendials

[ https://issues.apache.org/jira/browse/CTAKES-408?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Sean Finan closed CTAKES-408. - Assignee: Sean Finan Resolution: Information Provided [https://cwiki.apache.org/confluence/display/

[jira] [Commented] (CTAKES-557) remove log4jv1 dependency

[ https://issues.apache.org/jira/browse/CTAKES-557?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653225#comment-17653225 ] PJ Fanning commented on CTAKES-557: --- is there anything that can be done to help here?

[jira] [Commented] (CTAKES-557) remove log4jv1 dependency

[ https://issues.apache.org/jira/browse/CTAKES-557?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653227#comment-17653227 ] Sean Finan commented on CTAKES-557: --- Thank you for asking!  ctakes has a lot of depend