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https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Sean Finan closed CTAKES-490.
-----------------------------
Fix Version/s: future enhancement
(was: 4.0.0)
Assignee: Sean Finan (was: Alex Zbarcea)
Resolution: Fixed
Moved runCPE and runCVD profiles to ctakes-examples, which has all ctakes
modules (not ytex) in its classpath.
> cTAKES 4.0.1-SNAPSHOT - Problem with CVD and
> AggregatePlaintextFastUMLSProcessor
> --------------------------------------------------------------------------------
>
> Key: CTAKES-490
> URL: https://issues.apache.org/jira/browse/CTAKES-490
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-clinical-pipeline
> Affects Versions: 4.0.0
> Environment: Local
> Reporter: mlyNLP
> Assignee: Sean Finan
> Priority: Major
> Fix For: future enhancement
>
> Attachments: Problem_ProofOne.JPG, Problem_ProofThree.JPG,
> Problem_ProofTwo.JPG
>
>
> Hello,
> I'm aiming to extend cTAKES in order to fulfill the objectives of a project
> I'm working on. So I decided to check out the code of trunk. I followed all
> the steps of the developer's guide found here:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide
> I'm using Intellij by the way. Well, when I launch CVD from Intellij in order
> to test some changes I made in the code, I have a problem. I want to use the
> AggregatePlaintextFastUMLSProcessor. When I try to load it in the CVD UI, I
> have the following error:
> -----------------
>
> <exception>
> <message>org.apache.uima.resource.ResourceInitializationException: An
> import could not be resolved. No file with name
> "org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path
> or data path. (Descriptor:
> file:/C:/Users/User/Desktop/Tese_Mestrado_NLP/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)
> -----------------
> I can't understand why this exception happens at all. The
> DrugMentionAnnotator.xml indeed has an import of the TypeSystem.xml file. And
> this TypeSystem.xml file physically exists in the path described in the
> DrugMentionAnnotator.xml import. So, I don't really know why I have this
> error in CVD, since the file that is originating the problem exists indeed in
> the expectable path described in the DrugMentionAnnotator.xml import.
> I also add images as attachments that show the import in the
> DrugMentionAnnotator.xml and the proof that the file being imported (and the
> cause of the exception) actually exists where it should exist.
> Since I have followed all the steps in the Developer's Guide, I consider this
> to be a problem and decided to report it. I'm also blocked at the moment
> because of it.
> If you need additional information don't hesitate in demanding.
> *Expected result:* load AggregatePlaintextFastUMLSProcessor succesfully.
> *Obtained result:* loading AggregatePlaintextFastUMLSProcessor raises an
> exception.
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