Re: [PATCH] Add vcflib.

>From cda09da657bd18f21102b65729740b4819589ff9 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 25 Apr 2016 11:17:21 +0200 Subject: [PATCH] gnu: Add filevercmp. * gnu/packages/bioinformatics.scm (filevercmp): New variable. --- gnu/packages/bioinformatics.scm |

Re: [PATCH] Add vcflib.

>From 5cc17f0ceca12998a658dcd3cfd7494b137274e1 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 26 Apr 2016 19:28:54 +0200 Subject: [PATCH] gnu: Add tabixpp. * gnu/packages/bioinformatics.scm (tabixpp): New variable. --- gnu/packages/bioinformatics.scm |

Re: [PATCH] Add vcflib.

>From 80d296f9d3bc205eed06f98821bb5abd3ad8d40f Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 26 Apr 2016 19:35:10 +0200 Subject: [PATCH] gnu: Add multichoose. * gnu/packages/bioinformatics.scm (multichoose): New variable. --- gnu/packages/bioinformatics.scm |

Re: [PATCH] Add vcflib.

Ricardo Wurmus writes: > Roel Janssen writes: >> From 3ed14719121a952fca48a8ad3426588ebb58a130 Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 22 Mar 2016 15:57:33 +0100 >> Subject: [PATCH 7/8] gnu: Add intervaltree. > >> * gnu/packages/bi

Re: [PATCH] Add vcflib.

>From 98ed1adae91aca2c118779f5333dc21446f1c720 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 26 Apr 2016 19:48:31 +0200 Subject: [PATCH] gnu: Add intervaltree. * gnu/packages/bioinformatics.scm (intervaltree): New variable. --- gnu/packages/bioinformatics.scm |

Re: [PATCH] Add vcflib.

Ricardo Wurmus writes: > Roel Janssen writes: > >> From e75aa388931c92657336c8a15f88b6a0273f5e02 Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 22 Mar 2016 15:01:37 +0100 >> Subject: [PATCH 2/8] gnu: Add smithwaterman. > >> * gnu/packages/

Re: [PATCH] gnu: Add xz-java.

>From 8e9997429cb70c04d269516032e7d3b292d5ae95 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 27 Apr 2016 00:00:44 +0200 Subject: [PATCH] gnu: Add java-xz. * gnu/packages/java.scm (java-xz): New variable. --- gnu/packages/java.scm | 30 ++ 1 file changed,

Re: [PATCH] gnu: Add 4store.

>From e5b0f16d5d6e67d2c1f24729ce7f6490fa284d79 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 27 Apr 2016 00:44:22 +0200 Subject: [PATCH] gnu: Add 4store. * gnu/packages/databases.scm (4store): New variable. * gnu/packages/patches/4store-fix-buildsystem.patch: New file. * gnu/local

Re: [PATCH] gnu: Add mongodb.

Hello Ludo’, Ludovic Courtès writes: > Hi! > > Roel Janssen skribis: > >> My reasoning for keeping the third-party libraries in the tarball was >> simply because upstream made that choice. Unbundling can and probably >> will introduce differences in the beh

Re: [PATCH] gnu: Add 4store.

Leo Famulari writes: > On Wed, Apr 27, 2016 at 12:47:40AM +0200, Roel Janssen wrote: >> * gnu/packages/databases.scm (4store): New variable. >> * gnu/packages/patches/4store-fix-buildsystem.patch: New file. >> * gnu/local.mk (dist_patch_DATA): Add patch file entry. >

[PATCH] gnu: Add r-limma.

Dear Guix, I have two R packages I would like to add. The other package 'r-edger' depends on this one. This is the first time I'm attempting an inline patch, so I hope this works out well. Kind regards, Roel Janssen >From 565fa10f9896e1143419b2a2c6496b91a135a930 Mon Sep 17

[PATCH] gnu: Add r-edger.

Dear Guix, Here is a package for 'r-edger'. I sent another e-mail with the dependency 'r-limma'. Kind regards, Roel Janssen >From 5f31983e32f381dd5e98c93f8402770196fce4f2 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 3 May 2016 09:26:37 +0200 Subject: [PATCH] g

Re: [PATCH] gnu: Add freebayes

into this :). Kind regards, Roel Janssen Rob Syme writes: > Hi Ricardo > > I'm sorry for not checking the list beforehand! Interestingly, we ended up > with very different solutions to the problem of including the freebayes > dependencies. Using the recursive git fetch compil

Re: [PATCH] gnu: Add r-limma.

Dear Ricardo, Thanks for your quick response. Ricardo Wurmus writes: > Roel Janssen writes: > >> Dear Guix, >> >> I have two R packages I would like to add. The other package 'r-edger' >> depends on this one. This is the first time I'm attempting

Re: [PATCH] gnu: Add bash-tap.

t; I think using gnu-build-system is the way to go. Here's a patch using the gnu build system: >From 7daef2ee0fdb1aef7344da6ff0afe31efcf41cac Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 3 May 2016 12:43:00 +0200 Subject: [PATCH] gnu: Add bash-tap. * gnu/packages/bash.scm (bash-tap): New variable. --- gn

Re: [PATCH] gnu: Add nlopt.

Ludovic Courtès writes: > Hello! > > Roel Janssen skribis: > >> I think the licensing page on the website is pretty clear: >> http://ab-initio.mit.edu/wiki/index.php/NLopt_License_and_Copyright >> >> From the page: >>> The NLopt library is under th

Re: Cross-Origin Request blocked when browing non-www of packages page and mixed content

Ludovic Courtès writes: > Hello! > > Roel Janssen skribis: > >> I noticed that the build status icons don't work when browing: >> https://gnu.org/software/guix/packages/ (Notice the lack of 'www.') >> >> The reason: >> CORS head

Re: [PATCH] gnu: Add nlopt.

Ludovic Courtès writes: > Roel Janssen skribis: > >> Ludovic Courtès writes: > > [...] > >>> Still, according to luksan/COPYRIGHT, “[s]ubroutines PBUN, PNEW, PVAR, >>> PSEN” are “for your personal use […] [n]ot for redistribution”. >>> >>

[PATCH] gnu: Add r-coda.

Dear Guix, Here's another R package I would like to use with GNU Guix. Thanks for your time. Kind regards, Roel Janssen >From 1308ecf523c5d50bf345df9277e12e03336ce32c Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 3 May 2016 14:43:22 +0200 Subject: [PATCH] gnu: Add r-coda

[PATCH] gnu: Add r-estimability.

Dear Guix, Here's another R package. Kind regards, Roel Janssen >From 97775f169bcd9b81daa19ec7c298698340d5a7b9 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Tue, 3 May 2016 15:04:21 +0200 Subject: [PATCH] gnu: Add r-estimability. * gnu/packages/statistics.scm (r-estimabili

Re: [PATCH] gnu: Add nlopt.

Ludovic Courtès writes: > Roel Janssen skribis: > >> I added your magic for Guile. Here is the patch: >> >>>From 6221baadea331cff7e8ab6b9ea1b3bb7737b227f Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 3 May 2016 14:30:25 +0200 >>

Re: [PATCH] gnu: Add nlopt.

Alex Kost writes: > Roel Janssen (2016-05-03 23:17 +0300) wrote: > >> I've been submitting most packages this way. Should I align (method >> ...) to the r in origin for all packages in the future? > > Yes, 'method' is a sub-expression or 'origin&#

Re: [PATCH] gnu: Add r-coda.

I improved the patch by removing r-lattice because that is not needed, and I made a complete sentence in the description. Here it is: >From aedf6029283733a19941de2d2b641f87790189d3 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 4 May 2016 15:39:18 +0200 Subject: [PATCH] gnu: Add r-c

[PATCH] gnu: Add r-mvtnorm.

Dear Guix, Yet another patch for an R package. Kind regards, Roel Janssen >From ff2b4d8a0bc1ecf1dcc3a6ce8f3e457910e7aa33 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 4 May 2016 15:45:09 +0200 Subject: [PATCH] gnu: Add r-mvtnorm. * gnu/packages/statistics.scm (r-mvtnorm):

Re: [PATCH] gnu: Add r-coda.

So, we do need r-lattice when actually using the module.. I attached yet another patch. >From bc85f769c42418b307339aaafb2f3785a7a897e1 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 4 May 2016 15:53:45 +0200 Subject: [PATCH] gnu: Add r-coda. * gnu/packages/statistics.scm (r-coda):

Re: [PATCH] gnu: Add r-mvtnorm.

Leo Famulari writes: > On Wed, May 04, 2016 at 03:46:46PM +0200, Roel Janssen wrote: >> +(license license:gpl2+))) > > I can't find the "or later" text anywhere in the source distribution. > According to some recent guix-devel discussion [0], that's

Re: [PATCH] gnu: Add bash-tap.

Leo Famulari writes: > On Tue, May 03, 2016 at 12:44:57PM +0200, Roel Janssen wrote: >> * gnu/packages/bash.scm (bash-tap): New variable. > >> +(arguments >> + `(#:tests? #f ; There is no test suite. >> + #:phases >> + (modify-phases %

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