Dear Guix,
Here is a package for 'r-edger'.
I sent another e-mail with the dependency 'r-limma'.
Kind regards,
Roel Janssen
>From 5f31983e32f381dd5e98c93f8402770196fce4f2 Mon Sep 17 00:00:00 2001
From: Roel Janssen <r...@gnu.org>
Date: Tue, 3 May 2016 09:26:37 +0200
Subject: [PATCH] gnu: Add r-edger.
* gnu/packages/bioinformatics.scm (r-edger): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 079fd46..dc43fc0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4015,6 +4015,31 @@ use multiple corrections. Visualization of data can be
done either by
barplots or heatmaps.")
(license license:gpl2+)))
+(define-public r-edger
+ (package
+ (name "r-edger")
+ (version "3.12.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "edgeR" version))
+ (sha256
+ (base32
+ "1s5xliiswij1v3nqgkf4999njwdr9jirg6ypza4002xz8mwmyki6"))))
+ (properties `((upstream-name . "edgeR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-limma" ,r-limma)))
+ (home-page "http://bioinf.wehi.edu.au/edgeR";)
+ (synopsis "EdgeR does empirical analysis of digital gene expression data")
+ (description "This package can do differential expression analysis of
+RNA-seq expression profiles with biological replication. It implements a range
+of statistical methodology based on the negative binomial distributions,
+including empirical Bayes estimation, exact tests, generalized linear models
+and quasi-likelihood tests. It be applied to differential signal analysis of
+other types of genomic data that produce counts, including ChIP-seq, SAGE and
+CAGE.")
+ (license license:gpl2+)))
+
(define-public r-biocgenerics
(package
(name "r-biocgenerics")
--
2.7.4
